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Good to hear it was resolved. It sucks when you see this stuff happening but then you read that Ford resolves it without issue.
 
So i had this happen while driving home from picking up the car from the dealership after the motor swap, but it came up again today so i was wondering if anyone found out what causes this. I'm getting occasional flashing check engine lights that go away after about 5 seconds. Haven't tried to pull codes yet but from what i read it could be a bad connection or something. Anyone got any ideas?
 
I guess it's back to the dealer for you. I'm glad to hear you got you car back so fast, I expected it to take a month. I have that ticking sound at idle like you did but I haven't had it check out, I think I'm going going to the dealer on monday. Good luck getting you your issue resolved, I be following this. BTW how did know you had misfires, did you hear it or did it blow a code? I'm assuming a code.
 
Ya we had codes going for some time. I'm going to wait on taking it back till after i get all the brake in miles done. From what i have read, the flashing light doesn't cause any codes which are able to be pulled so i can't do much.
 

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