As I understand it, the issue in CA now is that the State's emission testing computers are looking for the authenticity of the calibration. Using checksum or some other info to determine the legitimate source of the tune. Using SCT or other device even to re-load the stock calibrations may be detectable? I've heard rumors of people needing to have Ford recalibrate ECU after being referred to the State Bureau of Auto Repair Referee.If you can get a stock intake, throttle body and air filter (unless its a JLT that doesn't require a tune) then you might be able to pass emissions with the stock tune even with the L&M intake cams.
When I've played around with loading and unloading tunes with my SCT X4 before I installed my JLT Series II CAI, the car would idle fine and go around the block just fine with the stock tune and my L&M intake cams, Boss exhaust cams, 2018 intake, and stock CAI with the exception of a K&N tube and drop-in filter. With the JLT Series II it would not idle well at all due to the different MAF flow.
Now if you have to drive the car around for 50 or so miles for it to be inspection ready since you cleared the ECU, I don't know how that would affect your car.
This could make the cams a problem too.
I'll be finding out myself very soon (Aug)